Summary of Actinomadura kijaniata NBRC 14229, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 8-Mar-2022 from the annotated genome of Actinomadura kijaniata NBRC 14229, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 26.0) [Karp16, Karp11] using MetaCyc version 26.0 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_BCQR01000001	139	134	4	1	147,283	RefSeq:NZ_BCQR01000001
NZ_BCQR01000004	117	117	0	0	127,777	RefSeq:NZ_BCQR01000004
NZ_BCQR01000007	122	116	6	0	118,677	RefSeq:NZ_BCQR01000007
NZ_BCQR01000008	108	108	0	0	117,295	RefSeq:NZ_BCQR01000008
NZ_BCQR01000005	105	105	0	0	110,078	RefSeq:NZ_BCQR01000005
NZ_BCQR01000009	111	101	6	4	106,010	RefSeq:NZ_BCQR01000009
NZ_BCQR01000010	108	106	0	2	105,408	RefSeq:NZ_BCQR01000010
NZ_BCQR01000011	108	107	1	0	101,541	RefSeq:NZ_BCQR01000011
NZ_BCQR01000012	96	94	0	2	98,962	RefSeq:NZ_BCQR01000012
NZ_BCQR01000015	98	95	0	3	96,671	RefSeq:NZ_BCQR01000015
NZ_BCQR01000016	98	97	0	1	96,333	RefSeq:NZ_BCQR01000016
NZ_BCQR01000021	78	77	0	1	93,537	RefSeq:NZ_BCQR01000021
NZ_BCQR01000024	95	94	1	0	92,840	RefSeq:NZ_BCQR01000024
NZ_BCQR01000025	85	84	0	1	89,083	RefSeq:NZ_BCQR01000025
NZ_BCQR01000026	72	70	0	2	88,497	RefSeq:NZ_BCQR01000026
NZ_BCQR01000029	77	73	0	4	87,020	RefSeq:NZ_BCQR01000029
NZ_BCQR01000030	93	89	1	3	86,414	RefSeq:NZ_BCQR01000030
NZ_BCQR01000020	80	80	0	0	84,271	RefSeq:NZ_BCQR01000020
NZ_BCQR01000031	69	67	0	2	83,433	RefSeq:NZ_BCQR01000031
NZ_BCQR01000032	67	67	0	0	83,165	RefSeq:NZ_BCQR01000032
NZ_BCQR01000033	79	76	0	3	82,081	RefSeq:NZ_BCQR01000033
NZ_BCQR01000013	87	85	0	2	81,484	RefSeq:NZ_BCQR01000013
NZ_BCQR01000034	81	81	0	0	81,354	RefSeq:NZ_BCQR01000034
NZ_BCQR01000035	70	70	0	0	79,793	RefSeq:NZ_BCQR01000035
NZ_BCQR01000036	74	69	4	1	77,422	RefSeq:NZ_BCQR01000036
NZ_BCQR01000037	75	73	0	2	74,993	RefSeq:NZ_BCQR01000037
NZ_BCQR01000040	81	79	0	2	73,894	RefSeq:NZ_BCQR01000040
NZ_BCQR01000041	77	73	2	2	73,721	RefSeq:NZ_BCQR01000041
NZ_BCQR01000042	75	73	1	1	72,683	RefSeq:NZ_BCQR01000042
NZ_BCQR01000043	65	62	2	1	70,779	RefSeq:NZ_BCQR01000043
NZ_BCQR01000044	80	78	1	1	70,570	RefSeq:NZ_BCQR01000044
NZ_BCQR01000045	63	62	0	1	70,107	RefSeq:NZ_BCQR01000045
NZ_BCQR01000046	71	69	0	2	68,987	RefSeq:NZ_BCQR01000046
NZ_BCQR01000047	58	57	0	1	68,717	RefSeq:NZ_BCQR01000047
NZ_BCQR01000048	61	60	0	1	67,891	RefSeq:NZ_BCQR01000048
NZ_BCQR01000002	48	47	0	1	67,043	RefSeq:NZ_BCQR01000002
NZ_BCQR01000053	60	59	0	1	64,892	RefSeq:NZ_BCQR01000053
NZ_BCQR01000054	61	58	2	1	63,733	RefSeq:NZ_BCQR01000054
NZ_BCQR01000003	47	46	0	1	63,432	RefSeq:NZ_BCQR01000003
NZ_BCQR01000055	66	62	1	3	62,967	RefSeq:NZ_BCQR01000055
NZ_BCQR01000058	70	69	1	0	62,704	RefSeq:NZ_BCQR01000058
NZ_BCQR01000059	68	63	3	2	62,328	RefSeq:NZ_BCQR01000059
NZ_BCQR01000027	52	52	0	0	61,970	RefSeq:NZ_BCQR01000027
NZ_BCQR01000060	48	48	0	0	59,955	RefSeq:NZ_BCQR01000060
NZ_BCQR01000057	59	56	1	2	58,485	RefSeq:NZ_BCQR01000057
NZ_BCQR01000061	61	59	0	2	58,048	RefSeq:NZ_BCQR01000061
NZ_BCQR01000062	53	52	0	1	57,729	RefSeq:NZ_BCQR01000062
NZ_BCQR01000063	54	54	0	0	57,104	RefSeq:NZ_BCQR01000063
NZ_BCQR01000064	52	52	0	0	57,061	RefSeq:NZ_BCQR01000064
NZ_BCQR01000065	27	26	0	1	55,910	RefSeq:NZ_BCQR01000065
NZ_BCQR01000066	50	50	0	0	55,745	RefSeq:NZ_BCQR01000066
NZ_BCQR01000067	56	54	2	0	55,685	RefSeq:NZ_BCQR01000067
NZ_BCQR01000068	47	47	0	0	55,599	RefSeq:NZ_BCQR01000068
NZ_BCQR01000017	44	43	0	1	55,253	RefSeq:NZ_BCQR01000017
NZ_BCQR01000022	56	55	0	1	55,184	RefSeq:NZ_BCQR01000022
NZ_BCQR01000069	53	52	1	0	54,970	RefSeq:NZ_BCQR01000069
NZ_BCQR01000070	38	38	0	0	54,452	RefSeq:NZ_BCQR01000070
NZ_BCQR01000071	45	44	0	1	54,134	RefSeq:NZ_BCQR01000071
NZ_BCQR01000072	57	55	1	1	53,776	RefSeq:NZ_BCQR01000072
NZ_BCQR01000075	49	48	0	1	53,593	RefSeq:NZ_BCQR01000075
NZ_BCQR01000076	48	48	0	0	53,526	RefSeq:NZ_BCQR01000076
NZ_BCQR01000077	46	42	2	2	53,490	RefSeq:NZ_BCQR01000077
NZ_BCQR01000078	46	46	0	0	53,082	RefSeq:NZ_BCQR01000078
NZ_BCQR01000079	46	46	0	0	52,404	RefSeq:NZ_BCQR01000079
NZ_BCQR01000080	59	54	4	1	51,966	RefSeq:NZ_BCQR01000080
NZ_BCQR01000081	68	66	0	2	50,944	RefSeq:NZ_BCQR01000081
NZ_BCQR01000082	49	49	0	0	50,923	RefSeq:NZ_BCQR01000082
NZ_BCQR01000083	46	45	0	1	50,810	RefSeq:NZ_BCQR01000083
NZ_BCQR01000084	48	46	1	1	49,899	RefSeq:NZ_BCQR01000084
NZ_BCQR01000052	46	45	0	1	49,405	RefSeq:NZ_BCQR01000052
NZ_BCQR01000085	48	48	0	0	49,355	RefSeq:NZ_BCQR01000085
NZ_BCQR01000086	42	40	0	2	48,758	RefSeq:NZ_BCQR01000086
NZ_BCQR01000090	47	47	0	0	48,468	RefSeq:NZ_BCQR01000090
NZ_BCQR01000091	42	42	0	0	47,925	RefSeq:NZ_BCQR01000091
NZ_BCQR01000092	45	44	0	1	47,362	RefSeq:NZ_BCQR01000092
NZ_BCQR01000093	30	30	0	0	47,177	RefSeq:NZ_BCQR01000093
NZ_BCQR01000094	42	42	0	0	46,419	RefSeq:NZ_BCQR01000094
NZ_BCQR01000095	41	40	0	1	45,258	RefSeq:NZ_BCQR01000095
NZ_BCQR01000096	34	32	0	2	45,125	RefSeq:NZ_BCQR01000096
NZ_BCQR01000097	50	50	0	0	45,016	RefSeq:NZ_BCQR01000097
NZ_BCQR01000098	44	42	0	2	44,941	RefSeq:NZ_BCQR01000098
NZ_BCQR01000074	49	48	0	1	44,674	RefSeq:NZ_BCQR01000074
NZ_BCQR01000099	44	44	0	0	44,413	RefSeq:NZ_BCQR01000099
NZ_BCQR01000100	51	50	0	1	43,976	RefSeq:NZ_BCQR01000100
NZ_BCQR01000038	39	39	0	0	43,611	RefSeq:NZ_BCQR01000038
NZ_BCQR01000101	43	40	0	3	43,606	RefSeq:NZ_BCQR01000101
NZ_BCQR01000102	43	42	0	1	43,326	RefSeq:NZ_BCQR01000102
NZ_BCQR01000105	49	48	0	1	42,967	RefSeq:NZ_BCQR01000105
NZ_BCQR01000106	45	45	0	0	42,935	RefSeq:NZ_BCQR01000106
NZ_BCQR01000107	38	38	0	0	42,665	RefSeq:NZ_BCQR01000107
NZ_BCQR01000108	40	40	0	0	41,993	RefSeq:NZ_BCQR01000108
NZ_BCQR01000112	44	42	1	1	41,141	RefSeq:NZ_BCQR01000112
NZ_BCQR01000113	38	38	0	0	40,975	RefSeq:NZ_BCQR01000113
NZ_BCQR01000114	33	32	0	1	40,738	RefSeq:NZ_BCQR01000114
NZ_BCQR01000115	39	36	2	1	39,980	RefSeq:NZ_BCQR01000115
NZ_BCQR01000018	40	40	0	0	39,521	RefSeq:NZ_BCQR01000018
NZ_BCQR01000116	16	16	0	0	39,073	RefSeq:NZ_BCQR01000116
NZ_BCQR01000104	34	34	0	0	38,665	RefSeq:NZ_BCQR01000104
NZ_BCQR01000117	43	41	1	1	38,649	RefSeq:NZ_BCQR01000117
NZ_BCQR01000118	39	37	2	0	38,558	RefSeq:NZ_BCQR01000118
NZ_BCQR01000119	38	38	0	0	38,443	RefSeq:NZ_BCQR01000119
NZ_BCQR01000050	37	35	0	2	38,361	RefSeq:NZ_BCQR01000050
NZ_BCQR01000120	34	34	0	0	38,350	RefSeq:NZ_BCQR01000120
NZ_BCQR01000121	38	36	0	2	38,088	RefSeq:NZ_BCQR01000121
NZ_BCQR01000023	34	33	0	1	37,809	RefSeq:NZ_BCQR01000023
NZ_BCQR01000122	32	32	0	0	37,720	RefSeq:NZ_BCQR01000122
NZ_BCQR01000123	36	36	0	0	37,628	RefSeq:NZ_BCQR01000123
NZ_BCQR01000124	41	39	0	2	37,375	RefSeq:NZ_BCQR01000124
NZ_BCQR01000125	37	37	0	0	37,339	RefSeq:NZ_BCQR01000125
NZ_BCQR01000128	28	28	0	0	36,684	RefSeq:NZ_BCQR01000128
NZ_BCQR01000129	37	36	0	1	36,337	RefSeq:NZ_BCQR01000129
NZ_BCQR01000130	38	37	0	1	35,626	RefSeq:NZ_BCQR01000130
NZ_BCQR01000132	34	33	0	1	35,454	RefSeq:NZ_BCQR01000132
NZ_BCQR01000131	30	29	0	1	35,311	RefSeq:NZ_BCQR01000131
NZ_BCQR01000133	36	36	0	0	34,898	RefSeq:NZ_BCQR01000133
NZ_BCQR01000136	43	42	0	1	34,203	RefSeq:NZ_BCQR01000136
NZ_BCQR01000137	30	29	1	0	34,084	RefSeq:NZ_BCQR01000137
NZ_BCQR01000138	23	23	0	0	33,980	RefSeq:NZ_BCQR01000138
NZ_BCQR01000139	33	33	0	0	33,669	RefSeq:NZ_BCQR01000139
NZ_BCQR01000140	28	25	2	1	33,592	RefSeq:NZ_BCQR01000140
NZ_BCQR01000141	38	37	0	1	33,543	RefSeq:NZ_BCQR01000141
NZ_BCQR01000142	31	31	0	0	33,495	RefSeq:NZ_BCQR01000142
NZ_BCQR01000143	34	33	1	0	33,358	RefSeq:NZ_BCQR01000143
NZ_BCQR01000144	32	32	0	0	32,387	RefSeq:NZ_BCQR01000144
NZ_BCQR01000145	32	32	0	0	31,782	RefSeq:NZ_BCQR01000145
NZ_BCQR01000146	31	31	0	0	31,633	RefSeq:NZ_BCQR01000146
NZ_BCQR01000147	25	24	1	0	31,545	RefSeq:NZ_BCQR01000147
NZ_BCQR01000148	31	30	0	1	31,429	RefSeq:NZ_BCQR01000148
NZ_BCQR01000039	27	25	0	2	31,241	RefSeq:NZ_BCQR01000039
NZ_BCQR01000152	31	29	0	2	30,658	RefSeq:NZ_BCQR01000152
NZ_BCQR01000153	26	26	0	0	30,652	RefSeq:NZ_BCQR01000153
NZ_BCQR01000151	30	28	0	2	30,624	RefSeq:NZ_BCQR01000151
NZ_BCQR01000154	26	26	0	0	30,471	RefSeq:NZ_BCQR01000154
NZ_BCQR01000155	29	29	0	0	30,056	RefSeq:NZ_BCQR01000155
NZ_BCQR01000126	28	28	0	0	29,890	RefSeq:NZ_BCQR01000126
NZ_BCQR01000156	24	23	0	1	29,423	RefSeq:NZ_BCQR01000156
NZ_BCQR01000157	23	22	0	1	28,886	RefSeq:NZ_BCQR01000157
NZ_BCQR01000158	30	29	0	1	28,673	RefSeq:NZ_BCQR01000158
NZ_BCQR01000159	24	23	0	1	28,551	RefSeq:NZ_BCQR01000159
NZ_BCQR01000160	25	25	0	0	28,201	RefSeq:NZ_BCQR01000160
NZ_BCQR01000049	17	17	0	0	27,897	RefSeq:NZ_BCQR01000049
NZ_BCQR01000161	22	21	1	0	27,642	RefSeq:NZ_BCQR01000161
NZ_BCQR01000162	26	26	0	0	27,504	RefSeq:NZ_BCQR01000162
NZ_BCQR01000163	32	31	0	1	27,287	RefSeq:NZ_BCQR01000163
NZ_BCQR01000164	24	22	1	1	26,973	RefSeq:NZ_BCQR01000164
NZ_BCQR01000165	25	24	1	0	26,888	RefSeq:NZ_BCQR01000165
NZ_BCQR01000170	28	27	0	1	26,379	RefSeq:NZ_BCQR01000170
NZ_BCQR01000171	27	26	0	1	26,275	RefSeq:NZ_BCQR01000171
NZ_BCQR01000172	22	22	0	0	26,096	RefSeq:NZ_BCQR01000172
NZ_BCQR01000168	22	20	0	2	25,827	RefSeq:NZ_BCQR01000168
NZ_BCQR01000175	26	26	0	0	25,806	RefSeq:NZ_BCQR01000175
NZ_BCQR01000176	23	22	1	0	25,789	RefSeq:NZ_BCQR01000176
NZ_BCQR01000028	28	28	0	0	25,661	RefSeq:NZ_BCQR01000028
NZ_BCQR01000177	27	25	0	2	25,481	RefSeq:NZ_BCQR01000177
NZ_BCQR01000178	29	28	0	1	25,430	RefSeq:NZ_BCQR01000178
NZ_BCQR01000179	26	26	0	0	25,208	RefSeq:NZ_BCQR01000179
NZ_BCQR01000150	28	27	0	1	25,150	RefSeq:NZ_BCQR01000150
NZ_BCQR01000180	24	23	0	1	25,141	RefSeq:NZ_BCQR01000180
NZ_BCQR01000181	19	19	0	0	24,941	RefSeq:NZ_BCQR01000181
NZ_BCQR01000182	21	21	0	0	24,722	RefSeq:NZ_BCQR01000182
NZ_BCQR01000167	23	21	0	2	24,501	RefSeq:NZ_BCQR01000167
NZ_BCQR01000109	22	21	0	1	24,198	RefSeq:NZ_BCQR01000109
NZ_BCQR01000183	19	19	0	0	23,514	RefSeq:NZ_BCQR01000183
NZ_BCQR01000184	20	18	0	2	23,187	RefSeq:NZ_BCQR01000184
NZ_BCQR01000185	22	22	0	0	23,107	RefSeq:NZ_BCQR01000185
NZ_BCQR01000186	23	23	0	0	22,919	RefSeq:NZ_BCQR01000186
NZ_BCQR01000187	21	20	0	1	22,806	RefSeq:NZ_BCQR01000187
NZ_BCQR01000188	22	22	0	0	22,715	RefSeq:NZ_BCQR01000188
NZ_BCQR01000189	20	19	0	1	22,459	RefSeq:NZ_BCQR01000189
NZ_BCQR01000190	24	24	0	0	22,394	RefSeq:NZ_BCQR01000190
NZ_BCQR01000191	20	20	0	0	22,370	RefSeq:NZ_BCQR01000191
NZ_BCQR01000192	27	24	3	0	22,305	RefSeq:NZ_BCQR01000192
NZ_BCQR01000193	17	16	0	1	22,007	RefSeq:NZ_BCQR01000193
NZ_BCQR01000194	18	18	0	0	21,941	RefSeq:NZ_BCQR01000194
NZ_BCQR01000087	21	21	0	0	21,898	RefSeq:NZ_BCQR01000087
NZ_BCQR01000195	23	23	0	0	21,753	RefSeq:NZ_BCQR01000195
NZ_BCQR01000196	18	17	0	1	21,479	RefSeq:NZ_BCQR01000196
NZ_BCQR01000197	18	18	0	0	21,220	RefSeq:NZ_BCQR01000197
NZ_BCQR01000198	21	20	0	1	21,123	RefSeq:NZ_BCQR01000198
NZ_BCQR01000199	18	17	0	1	21,077	RefSeq:NZ_BCQR01000199
NZ_BCQR01000134	17	16	0	1	20,786	RefSeq:NZ_BCQR01000134
NZ_BCQR01000200	16	16	0	0	20,548	RefSeq:NZ_BCQR01000200
NZ_BCQR01000201	17	14	2	1	20,459	RefSeq:NZ_BCQR01000201
NZ_BCQR01000202	16	15	0	1	20,393	RefSeq:NZ_BCQR01000202
NZ_BCQR01000203	15	15	0	0	20,235	RefSeq:NZ_BCQR01000203
NZ_BCQR01000204	22	21	0	1	19,799	RefSeq:NZ_BCQR01000204
NZ_BCQR01000205	16	16	0	0	19,736	RefSeq:NZ_BCQR01000205
NZ_BCQR01000206	14	14	0	0	19,432	RefSeq:NZ_BCQR01000206
NZ_BCQR01000207	19	19	0	0	19,301	RefSeq:NZ_BCQR01000207
NZ_BCQR01000208	12	12	0	0	19,053	RefSeq:NZ_BCQR01000208
NZ_BCQR01000209	15	15	0	0	18,541	RefSeq:NZ_BCQR01000209
NZ_BCQR01000210	19	18	0	1	18,497	RefSeq:NZ_BCQR01000210
NZ_BCQR01000211	15	15	0	0	18,442	RefSeq:NZ_BCQR01000211
NZ_BCQR01000212	17	16	0	1	18,437	RefSeq:NZ_BCQR01000212
NZ_BCQR01000213	20	19	0	1	18,317	RefSeq:NZ_BCQR01000213
NZ_BCQR01000214	20	17	2	1	18,104	RefSeq:NZ_BCQR01000214
NZ_BCQR01000215	19	17	0	2	17,841	RefSeq:NZ_BCQR01000215
NZ_BCQR01000216	18	12	4	2	17,721	RefSeq:NZ_BCQR01000216
NZ_BCQR01000217	17	16	0	1	17,653	RefSeq:NZ_BCQR01000217
NZ_BCQR01000218	18	17	0	1	17,600	RefSeq:NZ_BCQR01000218
NZ_BCQR01000219	15	15	0	0	17,282	RefSeq:NZ_BCQR01000219
NZ_BCQR01000222	15	13	1	1	16,979	RefSeq:NZ_BCQR01000222
NZ_BCQR01000223	16	16	0	0	16,640	RefSeq:NZ_BCQR01000223
NZ_BCQR01000224	14	14	0	0	16,158	RefSeq:NZ_BCQR01000224
NZ_BCQR01000225	13	13	0	0	15,961	RefSeq:NZ_BCQR01000225
NZ_BCQR01000226	17	14	1	2	15,860	RefSeq:NZ_BCQR01000226
NZ_BCQR01000227	20	18	2	0	15,815	RefSeq:NZ_BCQR01000227
NZ_BCQR01000051	14	14	0	0	15,782	RefSeq:NZ_BCQR01000051
NZ_BCQR01000228	15	14	1	0	15,761	RefSeq:NZ_BCQR01000228
NZ_BCQR01000229	19	19	0	0	15,615	RefSeq:NZ_BCQR01000229
NZ_BCQR01000230	14	14	0	0	15,547	RefSeq:NZ_BCQR01000230
NZ_BCQR01000014	15	13	0	2	15,376	RefSeq:NZ_BCQR01000014
NZ_BCQR01000231	16	15	0	1	15,234	RefSeq:NZ_BCQR01000231
NZ_BCQR01000234	14	13	0	1	14,904	RefSeq:NZ_BCQR01000234
NZ_BCQR01000173	16	16	0	0	14,788	RefSeq:NZ_BCQR01000173
NZ_BCQR01000236	16	15	0	1	14,306	RefSeq:NZ_BCQR01000236
NZ_BCQR01000237	14	14	0	0	14,153	RefSeq:NZ_BCQR01000237
NZ_BCQR01000241	15	14	0	1	13,457	RefSeq:NZ_BCQR01000241
NZ_BCQR01000135	13	10	0	3	13,378	RefSeq:NZ_BCQR01000135
NZ_BCQR01000088	11	11	0	0	13,336	RefSeq:NZ_BCQR01000088
NZ_BCQR01000089	14	14	0	0	13,198	RefSeq:NZ_BCQR01000089
NZ_BCQR01000243	14	14	0	0	12,824	RefSeq:NZ_BCQR01000243
NZ_BCQR01000220	15	15	0	0	12,787	RefSeq:NZ_BCQR01000220
NZ_BCQR01000245	18	18	0	0	12,515	RefSeq:NZ_BCQR01000245
NZ_BCQR01000247	13	12	0	1	12,206	RefSeq:NZ_BCQR01000247
NZ_BCQR01000248	12	10	2	0	11,959	RefSeq:NZ_BCQR01000248
NZ_BCQR01000249	13	13	0	0	11,697	RefSeq:NZ_BCQR01000249
NZ_BCQR01000253	11	11	0	0	11,494	RefSeq:NZ_BCQR01000253
NZ_BCQR01000254	13	11	2	0	11,283	RefSeq:NZ_BCQR01000254
NZ_BCQR01000260	11	11	0	0	10,527	RefSeq:NZ_BCQR01000260
NZ_BCQR01000262	13	12	0	1	9,801	RefSeq:NZ_BCQR01000262
NZ_BCQR01000274	12	11	0	1	7,979	RefSeq:NZ_BCQR01000274
129 Undisplayed Contigs/Replicons	456	444	21	49	706,677

Total:	9,572	9,250	104	218	10,258,935

Ortholog data available?	Yes

Database Contents

Genes	9,562
Pathways	286
Enzymatic Reactions	1,517
Transport Reactions	53
Polypeptides	9,598
Protein Complexes	5
Enzymes	1,203
Transporters	810
Compounds	1,167
Transcription Units	7,343
tRNAs	87
Protein Features	10,225
GO Terms	586

Database Version

29.0

Sequence Source	GCF_001552175.1
Taxonomic Lineage	cellular organisms Bacteria <bacteria> Terrabacteria group Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura kijaniata Actinomadura kijaniata NBRC 14229
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMD00046512
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	1220561
Annotation Provider	NCBI RefSeq
Annotation Date	2021-07-10
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version	5.2
Annotation Comment	Best-placed reference protein set; GeneMarkS-2+
NCBI Genome Type	representative

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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