Summary of Acinetobacter baumannii AB

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 15-Feb-2019 from the annotated genome of Acinetobacter baumannii AB_909-01-7, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 23.0) [Karp16, Karp11] using MetaCyc version 23.0 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_AMHY01000083	250	240	9	1	242,038	RefSeq:NZ_AMHY01000083
NZ_AMHY01000016	232	226	0	6	239,631	RefSeq:NZ_AMHY01000016
NZ_AMHY01000030	187	181	1	5	179,948	RefSeq:NZ_AMHY01000030
NZ_AMHY01000048	170	164	1	5	179,430	RefSeq:NZ_AMHY01000048
NZ_AMHY01000080	140	134	5	1	147,879	RefSeq:NZ_AMHY01000080
NZ_AMHY01000042	100	98	1	1	111,816	RefSeq:NZ_AMHY01000042
NZ_AMHY01000005	101	98	0	3	102,979	RefSeq:NZ_AMHY01000005
NZ_AMHY01000033	100	98	1	1	99,614	RefSeq:NZ_AMHY01000033
NZ_AMHY01000038	85	84	1	0	97,326	RefSeq:NZ_AMHY01000038
NZ_AMHY01000034	86	85	0	1	91,769	RefSeq:NZ_AMHY01000034
NZ_AMHY01000052	78	73	4	1	89,724	RefSeq:NZ_AMHY01000052
NZ_AMHY01000074	80	77	0	3	89,455	RefSeq:NZ_AMHY01000074
NZ_AMHY01000051	76	73	1	2	79,233	RefSeq:NZ_AMHY01000051
NZ_AMHY01000060	75	72	0	3	76,882	RefSeq:NZ_AMHY01000060
NZ_AMHY01000047	77	72	2	3	76,009	RefSeq:NZ_AMHY01000047
NZ_AMHY01000100	77	76	0	1	70,249	RefSeq:NZ_AMHY01000100
NZ_AMHY01000043	63	60	0	3	69,493	RefSeq:NZ_AMHY01000043
NZ_AMHY01000056	62	60	0	2	68,706	RefSeq:NZ_AMHY01000056
NZ_AMHY01000039	67	67	0	0	67,008	RefSeq:NZ_AMHY01000039
NZ_AMHY01000054	69	66	1	2	63,824	RefSeq:NZ_AMHY01000054
NZ_AMHY01000103	58	54	1	3	61,166	RefSeq:NZ_AMHY01000103
NZ_AMHY01000062	61	57	2	2	60,425	RefSeq:NZ_AMHY01000062
NZ_AMHY01000009	50	48	0	2	59,214	RefSeq:NZ_AMHY01000009
NZ_AMHY01000064	50	48	1	1	59,150	RefSeq:NZ_AMHY01000064
NZ_AMHY01000021	49	48	0	1	57,013	RefSeq:NZ_AMHY01000021
NZ_AMHY01000078	50	50	0	0	56,923	RefSeq:NZ_AMHY01000078
NZ_AMHY01000022	51	47	1	3	50,543	RefSeq:NZ_AMHY01000022
NZ_AMHY01000071	36	33	3	0	50,254	RefSeq:NZ_AMHY01000071
NZ_AMHY01000092	56	56	0	0	44,187	RefSeq:NZ_AMHY01000092
NZ_AMHY01000045	41	39	0	2	43,929	RefSeq:NZ_AMHY01000045
NZ_AMHY01000006	34	33	0	1	42,975	RefSeq:NZ_AMHY01000006
NZ_AMHY01000070	41	39	0	2	42,319	RefSeq:NZ_AMHY01000070
NZ_AMHY01000094	38	38	0	0	40,192	RefSeq:NZ_AMHY01000094
NZ_AMHY01000089	38	35	0	3	38,719	RefSeq:NZ_AMHY01000089
NZ_AMHY01000101	36	32	0	4	35,360	RefSeq:NZ_AMHY01000101
NZ_AMHY01000097	33	31	2	0	35,297	RefSeq:NZ_AMHY01000097
NZ_AMHY01000084	26	25	0	1	34,717	RefSeq:NZ_AMHY01000084
NZ_AMHY01000066	33	32	0	1	34,212	RefSeq:NZ_AMHY01000066
NZ_AMHY01000011	33	30	1	2	34,189	RefSeq:NZ_AMHY01000011
NZ_AMHY01000102	28	26	0	2	33,228	RefSeq:NZ_AMHY01000102
NZ_AMHY01000095	28	26	0	2	32,674	RefSeq:NZ_AMHY01000095
NZ_AMHY01000104	26	22	2	2	32,604	RefSeq:NZ_AMHY01000104
NZ_AMHY01000068	36	35	1	0	31,926	RefSeq:NZ_AMHY01000068
NZ_AMHY01000059	31	30	0	1	30,222	RefSeq:NZ_AMHY01000059
NZ_AMHY01000107	29	27	1	1	28,146	RefSeq:NZ_AMHY01000107
NZ_AMHY01000067	24	23	0	1	26,990	RefSeq:NZ_AMHY01000067
NZ_AMHY01000026	28	28	0	0	26,407	RefSeq:NZ_AMHY01000026
NZ_AMHY01000053	24	24	0	0	26,208	RefSeq:NZ_AMHY01000053
NZ_AMHY01000086	24	22	1	1	25,746	RefSeq:NZ_AMHY01000086
NZ_AMHY01000115	25	22	0	3	25,323	RefSeq:NZ_AMHY01000115
NZ_AMHY01000061	24	24	0	0	22,295	RefSeq:NZ_AMHY01000061
NZ_AMHY01000091	18	18	0	0	22,119	RefSeq:NZ_AMHY01000091
NZ_AMHY01000117	22	19	1	2	19,317	RefSeq:NZ_AMHY01000117
NZ_AMHY01000099	13	13	0	0	17,921	RefSeq:NZ_AMHY01000099
NZ_AMHY01000085	12	12	0	0	16,957	RefSeq:NZ_AMHY01000085
NZ_AMHY01000072	15	14	0	1	15,219	RefSeq:NZ_AMHY01000072
NZ_AMHY01000106	15	14	0	1	14,975	RefSeq:NZ_AMHY01000106
NZ_AMHY01000081	14	13	0	1	14,764	RefSeq:NZ_AMHY01000081
NZ_AMHY01000090	13	12	0	1	13,837	RefSeq:NZ_AMHY01000090
NZ_AMHY01000098	13	13	0	0	13,751	RefSeq:NZ_AMHY01000098
NZ_AMHY01000114	10	9	0	1	11,057	RefSeq:NZ_AMHY01000114
NZ_AMHY01000076	17	17	0	0	10,349	RefSeq:NZ_AMHY01000076
55 Undisplayed Contigs/Replicons	131	116	15	33	154,856

Total:	3,642	3,458	59	125	3,790,688

Ortholog data available?	Yes

Database Contents

Genes	3,642
Pathways	269
Enzymatic Reactions	1,296
Transport Reactions	96
Polypeptides	3,496
Protein Complexes	53
Enzymes	758
Transporters	332
Compounds	1,052
Transcription Units	2,563
tRNAs	52
GO Terms	1,267

Database Version

29.0

Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus/baumannii complex Acinetobacter baumannii Acinetobacter baumannii AB_909-01-7
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN02471281
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	1221269
Environment	blood
Host	Homo sapiens
Annotation Provider	NCBI
Annotation Date	2017-11-23
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline
Annotation Pipeline Version	4.3
Annotation Comment	Best-placed reference protein set; GeneMarkS+

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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