Database Authors
Pallavi Subhraveti1, Peter Midford1, Ingrid Keseler1, Anamika Kothari1, Ron Caspi1, Peter D Karp1
1SRI International
Summary This Pathway/Genome Database (PGDB) was generated on 12-July-2021 from the annotated genome of Acinetobacter courvalinii CCM 8635, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 25.0) [Karp16, Karp11] using MetaCyc version 25.0 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_BMDA010000011,9171,86623282,096,258RefSeq:NZ_BMDA01000001
NZ_BMDA01000002500486122521,284RefSeq:NZ_BMDA01000002
NZ_BMDA0100000337036091379,478RefSeq:NZ_BMDA01000003
NZ_BMDA01000004230213125234,514RefSeq:NZ_BMDA01000004
NZ_BMDA0100000521320463227,832RefSeq:NZ_BMDA01000005
NZ_BMDA0100000615615330161,628RefSeq:NZ_BMDA01000006
NZ_BMDA0100000713313201144,509RefSeq:NZ_BMDA01000007
NZ_BMDA0100000890845191,574RefSeq:NZ_BMDA01000008
NZ_BMDA0100000950480253,921RefSeq:NZ_BMDA01000009
18 Undisplayed Contigs/Replicons616228,720
Total:3,6683,54776453,939,718
Ortholog data available?Yes
Database Contents
Genes3,665
Pathways272
Enzymatic Reactions1,336
Transport Reactions78
Polypeptides3,563
Protein Complexes48
Enzymes768
Transporters374
Compounds1,003
Transcription Units2,597
tRNAs64
Protein Features4,331
GO Terms12
Database Version29.0
Sequence SourceGCF_014635545.1
Synonyms Acinetobacter genomosp. 14BJ
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Gammaproteobacteria
Moraxellales
Moraxellaceae
Acinetobacter
Acinetobacter courvalinii
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMD00244867
NCBI BioProjectPRJNA224116
NCBI-Taxonomy280147
Annotation ProviderNCBI RefSeq
Annotation Date2020-11-22
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version4.13
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
NCBI Genome Typerepresentative

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

Report Errors or Provide Feedback
Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.