Summary of Actinomadura meyerae DSM 44715, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Quang Ong¹, Ingrid Keseler¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 27-Feb-2018 from the annotated genome of Actinomadura meyerae DSM 44715, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 22.0) [Karp16, Karp11] using MetaCyc version 21.5 [Caspi18]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutess of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_FZOR01000001	550	541	3	6	609,824	RefSeq:NZ_FZOR01000001
NZ_FZOR01000002	360	342	4	14	367,139	RefSeq:NZ_FZOR01000002
NZ_FZOR01000003	299	288	6	5	293,952	RefSeq:NZ_FZOR01000003
NZ_FZOR01000004	195	189	0	6	291,982	RefSeq:NZ_FZOR01000004
NZ_FZOR01000005	266	255	2	9	286,563	RefSeq:NZ_FZOR01000005
NZ_FZOR01000006	261	256	1	4	276,182	RefSeq:NZ_FZOR01000006
NZ_FZOR01000007	209	203	3	3	256,893	RefSeq:NZ_FZOR01000007
NZ_FZOR01000008	218	212	1	5	229,268	RefSeq:NZ_FZOR01000008
NZ_FZOR01000009	165	161	0	4	193,424	RefSeq:NZ_FZOR01000009
NZ_FZOR01000010	179	172	2	5	192,047	RefSeq:NZ_FZOR01000010
NZ_FZOR01000011	161	159	0	2	186,538	RefSeq:NZ_FZOR01000011
NZ_FZOR01000012	188	182	1	5	183,723	RefSeq:NZ_FZOR01000012
NZ_FZOR01000013	185	180	0	5	183,327	RefSeq:NZ_FZOR01000013
NZ_FZOR01000014	158	152	3	3	174,277	RefSeq:NZ_FZOR01000014
NZ_FZOR01000015	155	150	1	4	172,313	RefSeq:NZ_FZOR01000015
NZ_FZOR01000016	152	148	2	2	165,283	RefSeq:NZ_FZOR01000016
NZ_FZOR01000017	144	138	2	4	154,311	RefSeq:NZ_FZOR01000017
NZ_FZOR01000018	139	130	2	7	148,602	RefSeq:NZ_FZOR01000018
NZ_FZOR01000019	144	137	3	4	148,346	RefSeq:NZ_FZOR01000019
NZ_FZOR01000020	135	134	0	1	143,876	RefSeq:NZ_FZOR01000020
NZ_FZOR01000021	122	120	1	1	143,406	RefSeq:NZ_FZOR01000021
NZ_FZOR01000022	116	112	0	4	136,100	RefSeq:NZ_FZOR01000022
NZ_FZOR01000023	126	124	0	2	134,533	RefSeq:NZ_FZOR01000023
NZ_FZOR01000024	127	118	7	2	133,291	RefSeq:NZ_FZOR01000024
NZ_FZOR01000025	128	126	0	2	131,560	RefSeq:NZ_FZOR01000025
NZ_FZOR01000026	107	104	0	3	120,226	RefSeq:NZ_FZOR01000026
NZ_FZOR01000027	109	106	0	3	111,883	RefSeq:NZ_FZOR01000027
NZ_FZOR01000028	106	102	1	3	110,104	RefSeq:NZ_FZOR01000028
NZ_FZOR01000029	92	84	2	6	110,007	RefSeq:NZ_FZOR01000029
NZ_FZOR01000030	108	104	0	4	107,747	RefSeq:NZ_FZOR01000030
NZ_FZOR01000031	98	93	0	5	100,689	RefSeq:NZ_FZOR01000031
NZ_FZOR01000032	88	81	0	7	96,401	RefSeq:NZ_FZOR01000032
NZ_FZOR01000033	88	84	3	1	95,220	RefSeq:NZ_FZOR01000033
NZ_FZOR01000034	86	78	4	4	94,230	RefSeq:NZ_FZOR01000034
NZ_FZOR01000035	91	90	0	1	92,644	RefSeq:NZ_FZOR01000035
NZ_FZOR01000036	88	85	1	2	89,756	RefSeq:NZ_FZOR01000036
NZ_FZOR01000037	83	79	1	3	87,761	RefSeq:NZ_FZOR01000037
NZ_FZOR01000038	74	74	0	0	86,125	RefSeq:NZ_FZOR01000038
NZ_FZOR01000039	81	78	0	3	85,928	RefSeq:NZ_FZOR01000039
NZ_FZOR01000040	75	74	0	1	85,094	RefSeq:NZ_FZOR01000040
NZ_FZOR01000041	67	63	0	4	82,682	RefSeq:NZ_FZOR01000041
NZ_FZOR01000042	73	71	1	1	79,519	RefSeq:NZ_FZOR01000042
NZ_FZOR01000043	74	72	1	1	79,437	RefSeq:NZ_FZOR01000043
NZ_FZOR01000044	81	77	3	1	71,688	RefSeq:NZ_FZOR01000044
NZ_FZOR01000045	74	70	2	2	69,450	RefSeq:NZ_FZOR01000045
NZ_FZOR01000046	60	58	0	2	63,025	RefSeq:NZ_FZOR01000046
NZ_FZOR01000047	60	57	0	3	61,068	RefSeq:NZ_FZOR01000047
NZ_FZOR01000048	55	54	0	1	61,042	RefSeq:NZ_FZOR01000048
NZ_FZOR01000049	53	53	0	0	60,700	RefSeq:NZ_FZOR01000049
NZ_FZOR01000050	48	47	0	1	60,505	RefSeq:NZ_FZOR01000050
NZ_FZOR01000051	57	50	2	5	59,198	RefSeq:NZ_FZOR01000051
NZ_FZOR01000052	42	40	0	2	53,977	RefSeq:NZ_FZOR01000052
NZ_FZOR01000053	46	43	2	1	49,118	RefSeq:NZ_FZOR01000053
NZ_FZOR01000054	40	40	0	0	47,637	RefSeq:NZ_FZOR01000054
NZ_FZOR01000055	38	37	0	1	47,266	RefSeq:NZ_FZOR01000055
NZ_FZOR01000056	38	35	2	1	45,037	RefSeq:NZ_FZOR01000056
NZ_FZOR01000057	32	32	0	0	44,049	RefSeq:NZ_FZOR01000057
NZ_FZOR01000058	38	34	2	2	44,009	RefSeq:NZ_FZOR01000058
NZ_FZOR01000059	36	32	1	3	43,588	RefSeq:NZ_FZOR01000059
NZ_FZOR01000060	38	37	0	1	42,990	RefSeq:NZ_FZOR01000060
NZ_FZOR01000061	40	38	0	2	40,884	RefSeq:NZ_FZOR01000061
NZ_FZOR01000062	42	42	0	0	39,605	RefSeq:NZ_FZOR01000062
NZ_FZOR01000063	38	35	1	2	36,657	RefSeq:NZ_FZOR01000063
NZ_FZOR01000064	32	32	0	0	34,437	RefSeq:NZ_FZOR01000064
NZ_FZOR01000065	35	34	1	0	33,618	RefSeq:NZ_FZOR01000065
NZ_FZOR01000066	34	31	0	3	32,534	RefSeq:NZ_FZOR01000066
NZ_FZOR01000067	25	25	0	0	31,662	RefSeq:NZ_FZOR01000067
NZ_FZOR01000068	26	25	0	1	30,712	RefSeq:NZ_FZOR01000068
NZ_FZOR01000069	28	25	0	3	27,696	RefSeq:NZ_FZOR01000069
NZ_FZOR01000070	25	25	0	0	24,888	RefSeq:NZ_FZOR01000070
NZ_FZOR01000071	18	18	0	0	23,757	RefSeq:NZ_FZOR01000071
NZ_FZOR01000072	13	13	0	0	20,932	RefSeq:NZ_FZOR01000072
NZ_FZOR01000073	18	17	0	1	19,616	RefSeq:NZ_FZOR01000073
NZ_FZOR01000074	19	18	0	1	18,366	RefSeq:NZ_FZOR01000074
NZ_FZOR01000076	12	9	0	3	10,338	RefSeq:NZ_FZOR01000076
46 Undisplayed Contigs/Replicons	87	85	3	30	170,698

Total:	7,829	7,519	77	233	8,572,960

Ortholog data available?	Yes

Database Contents

Genes	7,824
Pathways	251
Enzymatic Reactions	1,542
Transport Reactions	68
Polypeptides	7,527
Protein Complexes	30
Enzymes	1,208
Transporters	648
Compounds	1,330
Transcription Units	5,538
tRNAs	62
Protein Features	8,663
GO Terms	22,167

Database Version

29.0

Synonyms	Actinomadura meyerae corrig. Quintana et al. 2004 Actinomadura meyerii DSM 44715 JCM 13237 NRRL B-24247 strain A288
Taxonomic Lineage	cellular organisms Bacteria <bacteria> Terrabacteria group Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinomadura Actinomadura meyerae
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN05443665
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	240840
NCBI Genome Type	representative

References

Caspi18: Caspi R, Billington R, Fulcher CA, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Midford PE, Ong Q, Ong WK, Paley S, Subhraveti P, Karp PD (2018). "The MetaCyc database of metabolic pathways and enzymes." Nucleic Acids Res 46(D1);D633-D639. PMID: 29059334

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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