Summary of Acinetobacter baumannii 6013150, version 29.0

Tier 3 Uncurated Organism Database

Database Authors

Pallavi Subhraveti¹, Peter Midford¹, Anamika Kothari¹, Ron Caspi¹, Peter D Karp¹

Summary

This Pathway/Genome Database (PGDB) was generated on 01-June-2022 from the annotated genome of Acinetobacter baumannii 6013150, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 26.0) [Karp16, Karp11] using MetaCyc version 26.0 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.

Genome

Contig	Total Genes	Protein Genes	RNA Genes	Pseudogenes	Size (bp)	NCBI Link
NZ_GL891644	144	142	0	2	144,150	RefSeq:NZ_GL891644
NZ_GL891615	120	114	0	6	142,040	RefSeq:NZ_GL891615
NZ_GL891649	128	126	1	1	138,408	RefSeq:NZ_GL891649
NZ_GL891625	121	118	1	2	117,884	RefSeq:NZ_GL891625
NZ_GL891620	103	101	1	1	108,716	RefSeq:NZ_GL891620
NZ_GL891648	89	88	0	1	95,212	RefSeq:NZ_GL891648
NZ_GL891683	91	89	0	2	87,367	RefSeq:NZ_GL891683
NZ_GL891647	74	73	0	1	82,708	RefSeq:NZ_GL891647
NZ_GL891636	67	67	0	0	78,280	RefSeq:NZ_GL891636
NZ_GL891637	72	70	1	1	75,716	RefSeq:NZ_GL891637
NZ_GL891619	65	65	0	0	69,530	RefSeq:NZ_GL891619
NZ_GL891808	67	65	0	2	68,336	RefSeq:NZ_GL891808
NZ_GL891634	66	66	0	0	65,803	RefSeq:NZ_GL891634
NZ_GL891664	59	59	0	0	62,286	RefSeq:NZ_GL891664
NZ_GL891640	60	59	0	1	61,993	RefSeq:NZ_GL891640
NZ_GL891645	52	52	0	0	61,384	RefSeq:NZ_GL891645
NZ_GL891691	53	53	0	0	61,250	RefSeq:NZ_GL891691
NZ_GL891652	64	62	1	1	60,762	RefSeq:NZ_GL891652
NZ_GL891813	53	50	1	2	59,428	RefSeq:NZ_GL891813
NZ_GL891700	54	51	2	1	55,957	RefSeq:NZ_GL891700
NZ_GL891697	52	51	0	1	55,183	RefSeq:NZ_GL891697
NZ_GL891677	57	57	0	0	51,881	RefSeq:NZ_GL891677
NZ_GL891713	44	44	0	0	51,833	RefSeq:NZ_GL891713
NZ_GL891659	52	52	0	0	50,137	RefSeq:NZ_GL891659
NZ_GL891631	42	41	0	1	48,669	RefSeq:NZ_GL891631
NZ_GL891668	57	55	1	1	47,274	RefSeq:NZ_GL891668
NZ_GL891651	44	41	0	3	46,301	RefSeq:NZ_GL891651
NZ_GL891643	49	44	0	5	44,577	RefSeq:NZ_GL891643
NZ_GL891623	43	43	0	0	43,679	RefSeq:NZ_GL891623
NZ_GL891656	48	47	0	1	43,074	RefSeq:NZ_GL891656
NZ_GL891739	39	39	0	0	42,934	RefSeq:NZ_GL891739
NZ_GL891688	39	38	0	1	41,357	RefSeq:NZ_GL891688
NZ_GL891650	37	33	1	3	40,133	RefSeq:NZ_GL891650
NZ_GL891635	50	49	0	1	40,027	RefSeq:NZ_GL891635
NZ_GL891711	37	36	0	1	39,672	RefSeq:NZ_GL891711
NZ_GL891731	40	39	0	1	38,107	RefSeq:NZ_GL891731
NZ_GL891702	37	36	0	1	37,569	RefSeq:NZ_GL891702
NZ_GL891672	32	32	0	0	36,861	RefSeq:NZ_GL891672
NZ_GL891695	27	27	0	0	36,610	RefSeq:NZ_GL891695
NZ_GL891686	29	29	0	0	35,476	RefSeq:NZ_GL891686
NZ_GL891698	30	29	0	1	35,312	RefSeq:NZ_GL891698
NZ_GL891733	35	35	0	0	35,272	RefSeq:NZ_GL891733
NZ_GL891657	45	44	1	0	34,758	RefSeq:NZ_GL891657
NZ_GL891639	32	32	0	0	34,560	RefSeq:NZ_GL891639
NZ_GL891618	35	35	0	0	34,264	RefSeq:NZ_GL891618
NZ_GL891671	32	31	0	1	34,220	RefSeq:NZ_GL891671
NZ_GL891728	28	26	2	0	34,193	RefSeq:NZ_GL891728
NZ_GL891626	32	32	0	0	33,503	RefSeq:NZ_GL891626
NZ_GL891681	31	30	0	1	33,395	RefSeq:NZ_GL891681
NZ_GL891660	34	33	0	1	32,871	RefSeq:NZ_GL891660
NZ_GL891796	27	27	0	0	32,226	RefSeq:NZ_GL891796
NZ_GL891684	27	27	0	0	29,689	RefSeq:NZ_GL891684
NZ_GL891682	25	25	0	0	27,613	RefSeq:NZ_GL891682
NZ_GL891701	25	24	0	1	26,557	RefSeq:NZ_GL891701
NZ_GL891633	25	24	0	1	26,197	RefSeq:NZ_GL891633
NZ_GL891669	25	25	0	0	25,606	RefSeq:NZ_GL891669
NZ_GL891617	19	19	0	0	25,408	RefSeq:NZ_GL891617
NZ_GL891712	23	23	0	0	25,221	RefSeq:NZ_GL891712
NZ_GL891630	18	17	0	1	24,703	RefSeq:NZ_GL891630
NZ_GL891641	26	25	0	1	24,457	RefSeq:NZ_GL891641
NZ_GL891708	25	21	1	3	22,546	RefSeq:NZ_GL891708
NZ_GL891736	22	21	0	1	22,390	RefSeq:NZ_GL891736
NZ_GL891744	17	17	0	0	22,092	RefSeq:NZ_GL891744
NZ_GL891745	23	22	0	1	21,604	RefSeq:NZ_GL891745
NZ_GL891632	33	31	0	2	21,299	RefSeq:NZ_GL891632
NZ_GL891667	20	20	0	0	20,767	RefSeq:NZ_GL891667
NZ_GL891758	13	13	0	0	20,089	RefSeq:NZ_GL891758
NZ_GL891715	17	16	0	1	19,636	RefSeq:NZ_GL891715
NZ_GL891740	14	14	0	0	17,824	RefSeq:NZ_GL891740
NZ_GL891646	22	20	1	1	16,360	RefSeq:NZ_GL891646
NZ_GL891693	17	17	0	0	16,354	RefSeq:NZ_GL891693
NZ_GL891726	14	13	0	1	16,028	RefSeq:NZ_GL891726
NZ_GL891720	15	14	0	1	15,921	RefSeq:NZ_GL891720
NZ_GL891722	15	14	0	1	15,242	RefSeq:NZ_GL891722
NZ_GL891732	11	11	0	0	14,839	RefSeq:NZ_GL891732
NZ_GL891690	15	15	0	0	14,789	RefSeq:NZ_GL891690
NZ_GL891654	13	12	0	1	14,053	RefSeq:NZ_GL891654
NZ_GL891749	13	13	0	0	14,024	RefSeq:NZ_GL891749
NZ_GL891706	12	12	0	0	13,309	RefSeq:NZ_GL891706
NZ_GL891760	17	15	1	1	13,265	RefSeq:NZ_GL891760
NZ_GL891689	15	10	0	5	13,138	RefSeq:NZ_GL891689
NZ_GL891616	16	15	0	1	12,351	RefSeq:NZ_GL891616
NZ_GL891742	13	12	1	0	12,242	RefSeq:NZ_GL891742
NZ_GL891751	13	12	0	1	11,627	RefSeq:NZ_GL891751
NZ_GL891723	11	10	0	1	11,031	RefSeq:NZ_GL891723
117 Undisplayed Contigs/Replicons	321	311	12	47	395,829

Total:	3,817	3,667	29	121	3,987,238

Ortholog data available?	Yes

Database Contents

Genes	3,815
Pathways	301
Enzymatic Reactions	1,468
Transport Reactions	84
Polypeptides	3,749
Protein Complexes	77
Enzymes	827
Transporters	353
Compounds	1,108
Transcription Units	2,619
tRNAs	21
Protein Features	4,400
GO Terms	2,332

Database Version

29.0

Sequence Source	GCF_000163355.2
Synonyms	Acinetobacter sp. 6013150 Acinetobacter baumannii 6013150
Taxonomic Lineage	cellular organisms Bacteria <bacteria> Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter calcoaceticus/baumannii complex Acinetobacter baumannii Acinetobacter baumannii 6013150
Genetic Code Number	11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLE	SAMN00189091
NCBI BioProject	PRJNA224116
NCBI-Taxonomy	525243
Environment	skin
Host	Homo sapiens
Human Microbiome Body Site	skin
Annotation Provider	NCBI RefSeq
Annotation Date	2021-11-7
Annotation Pipeline	NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version	5.3
Annotation Comment	Best-placed reference protein set; GeneMarkS-2+

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.

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