Database Authors
Pallavi Subhraveti1, Peter Midford1, Ingrid Keseler1, Anamika Kothari1, Ron Caspi1, Peter D Karp1
1SRI International
Summary This Pathway/Genome Database (PGDB) was generated on 12-July-2021 from the annotated genome of Acinetobacter lwoffii NBRC 109760, as obtained from RefSeq (see the RefSeq entry for the authors of the original genome sequence). The PGDB was created computationally by the PathoLogic component of the Pathway Tools software (version 25.0) [Karp16, Karp11] using MetaCyc version 25.0 [Caspi20]. It has not undergone any manual curation or review, and may contain errors. Development of this PGDB was supported by grant GM080746 from the National Institutes of Health.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_BBSQ0100000113312445151,659RefSeq:NZ_BBSQ01000001
NZ_BBSQ0100000214013325148,601RefSeq:NZ_BBSQ01000002
NZ_BBSQ0100000314413644144,785RefSeq:NZ_BBSQ01000003
NZ_BBSQ0100000414213813141,207RefSeq:NZ_BBSQ01000004
NZ_BBSQ0100000512211642137,137RefSeq:NZ_BBSQ01000005
NZ_BBSQ010000061009901116,175RefSeq:NZ_BBSQ01000006
NZ_BBSQ01000007939102113,458RefSeq:NZ_BBSQ01000007
NZ_BBSQ0100000811710782113,089RefSeq:NZ_BBSQ01000008
NZ_BBSQ0100000910710331111,790RefSeq:NZ_BBSQ01000009
NZ_BBSQ0100001012512140109,162RefSeq:NZ_BBSQ01000010
NZ_BBSQ0100001173721083,780RefSeq:NZ_BBSQ01000011
NZ_BBSQ0100001276751082,268RefSeq:NZ_BBSQ01000012
NZ_BBSQ0100001368680074,325RefSeq:NZ_BBSQ01000013
NZ_BBSQ0100001465650070,616RefSeq:NZ_BBSQ01000014
NZ_BBSQ0100001564640069,550RefSeq:NZ_BBSQ01000015
NZ_BBSQ0100001665605069,444RefSeq:NZ_BBSQ01000016
NZ_BBSQ0100001762581368,800RefSeq:NZ_BBSQ01000017
NZ_BBSQ0100001892910167,524RefSeq:NZ_BBSQ01000018
NZ_BBSQ0100001955531160,610RefSeq:NZ_BBSQ01000019
NZ_BBSQ0100002062548057,143RefSeq:NZ_BBSQ01000020
NZ_BBSQ0100002152511055,885RefSeq:NZ_BBSQ01000021
NZ_BBSQ0100002253530055,624RefSeq:NZ_BBSQ01000022
NZ_BBSQ0100002344440055,154RefSeq:NZ_BBSQ01000023
NZ_BBSQ0100002452502054,897RefSeq:NZ_BBSQ01000024
NZ_BBSQ0100002554540054,223RefSeq:NZ_BBSQ01000025
NZ_BBSQ0100002647470053,433RefSeq:NZ_BBSQ01000026
NZ_BBSQ0100002745450050,505RefSeq:NZ_BBSQ01000027
NZ_BBSQ0100002845420349,941RefSeq:NZ_BBSQ01000028
NZ_BBSQ0100002962620048,103RefSeq:NZ_BBSQ01000029
NZ_BBSQ0100003044440045,800RefSeq:NZ_BBSQ01000030
NZ_BBSQ0100003142411042,328RefSeq:NZ_BBSQ01000031
NZ_BBSQ0100003233330040,879RefSeq:NZ_BBSQ01000032
NZ_BBSQ0100003334295037,209RefSeq:NZ_BBSQ01000033
NZ_BBSQ0100003428280031,011RefSeq:NZ_BBSQ01000034
NZ_BBSQ0100003529280130,298RefSeq:NZ_BBSQ01000035
NZ_BBSQ0100003625214026,286RefSeq:NZ_BBSQ01000036
NZ_BBSQ0100003722190325,124RefSeq:NZ_BBSQ01000037
NZ_BBSQ0100003819190024,248RefSeq:NZ_BBSQ01000038
NZ_BBSQ0100003924240024,224RefSeq:NZ_BBSQ01000039
NZ_BBSQ0100004030260423,432RefSeq:NZ_BBSQ01000040
NZ_BBSQ0100004121200122,019RefSeq:NZ_BBSQ01000041
NZ_BBSQ0100004219190021,809RefSeq:NZ_BBSQ01000042
NZ_BBSQ0100004326250121,656RefSeq:NZ_BBSQ01000043
NZ_BBSQ0100004422210121,204RefSeq:NZ_BBSQ01000044
NZ_BBSQ0100004519110820,976RefSeq:NZ_BBSQ01000045
NZ_BBSQ0100004622170520,334RefSeq:NZ_BBSQ01000046
NZ_BBSQ0100004718140420,238RefSeq:NZ_BBSQ01000047
NZ_BBSQ0100004822220019,270RefSeq:NZ_BBSQ01000048
NZ_BBSQ0100004913110217,664RefSeq:NZ_BBSQ01000049
NZ_BBSQ0100005017170017,001RefSeq:NZ_BBSQ01000050
NZ_BBSQ0100005118180016,692RefSeq:NZ_BBSQ01000051
NZ_BBSQ0100005219190016,080RefSeq:NZ_BBSQ01000052
NZ_BBSQ0100005314140016,065RefSeq:NZ_BBSQ01000053
NZ_BBSQ0100005416150115,382RefSeq:NZ_BBSQ01000054
NZ_BBSQ0100005517160114,879RefSeq:NZ_BBSQ01000055
NZ_BBSQ0100005613120114,265RefSeq:NZ_BBSQ01000056
NZ_BBSQ0100005719190014,170RefSeq:NZ_BBSQ01000057
NZ_BBSQ010000581480613,675RefSeq:NZ_BBSQ01000058
NZ_BBSQ0100005913130012,964RefSeq:NZ_BBSQ01000059
NZ_BBSQ0100006014140011,681RefSeq:NZ_BBSQ01000060
NZ_BBSQ0100006114131011,674RefSeq:NZ_BBSQ01000061
NZ_BBSQ0100006212120010,675RefSeq:NZ_BBSQ01000062
38 Undisplayed Contigs/Replicons8582314108,784
Total:3,1703,02064863,298,884
Ortholog data available?Yes
Database Contents
Genes3,170
Pathways237
Enzymatic Reactions1,186
Transport Reactions76
Polypeptides3,050
Protein Complexes40
Enzymes723
Transporters264
Compounds872
Transcription Units2,211
tRNAs58
Protein Features3,650
GO Terms20
Database Version29.0
Sequence SourceGCF_000836095.1
Synonyms Acinetobacter genomosp. 8
Acinetobacter genomosp. 9
Acinetobacter genomospecies 8
Acinetobacter genomospecies 9
Moraxella lwoffi
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Pseudomonadota
Gammaproteobacteria
Moraxellales
Moraxellaceae
Acinetobacter
Acinetobacter lwoffii
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMD00019884
NCBI BioProjectPRJNA224116
NCBI-Taxonomy28090
Annotation ProviderNCBI RefSeq
Annotation Date2020-05-17
Annotation PipelineNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Pipeline Version4.11
Annotation CommentBest-placed reference protein set; GeneMarkS-2+
NCBI Genome Typerepresentative

References

Caspi20: Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD (2020). "The MetaCyc database of metabolic pathways and enzymes - a 2019 update." Nucleic Acids Res 48(D1);D445-D453. PMID: 31586394

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

Karp16: Karp PD, Latendresse M, Paley SM, Krummenacker M, Ong QD, Billington R, Kothari A, Weaver D, Lee T, Subhraveti P, Spaulding A, Fulcher C, Keseler IM, Caspi R (2016). "Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology." Brief Bioinform 17(5);877-90. PMID: 26454094

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.