Summary This Pathway/Genome Database (PGDB) was generated by the PathoLogic [Karp10, Karp11, Caspi14] component of Pathway Tools software version 22.0 and MetaCyc version 22.0 on 22-May-2018 16:04:07.
Genome
ContigTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
NZ_KE1504501,0571,01025221,289,359RefSeq:NZ_KE150450
NZ_KE150451602570239688,331RefSeq:NZ_KE150451
NZ_KE150452394375154452,754RefSeq:NZ_KE150452
Total:2,0531,95563352,430,444
Ortholog data available?Yes
Database Contents
Genes2,054
Pathways135
Enzymatic Reactions699
Transport Reactions44
Polypeptides1,958
Protein Complexes21
Enzymes386
Transporters169
Compounds602
Transcription Units1,325
tRNAs46
Protein Features2,472
GO Terms9,636
Database Version29.0
Taxonomic Lineage cellular organisms
Bacteria <bacteria>
Terrabacteria group
Actinomycetota
Actinomycetes
Actinomycetales
Actinomycetaceae
Actinomyces
Actinomyces sp. HPA0247
Genetic Code Number 11 -- Bacterial, Archaeal and Plant Plastid (same as Standard, except for alternate initiation codons)
BIOSAMPLESAMN02596975
NCBI BioProjectPRJNA224116
NCBI-Taxonomy1203556
Human Microbiome Body Sitenot-specified

References

Caspi14: Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, Holland TA, Keseler IM, Kothari A, Kubo A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Subhraveti P, Weaver DS, Weerasinghe D, Zhang P, Karp PD (2014). "The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases." Nucleic Acids Res. 42(1):D459-D471. PMID: 24225315

Karp10: Karp PD, Paley SM, Krummenacker M, Latendresse M, Dale JM, Lee TJ, Kaipa P, Gilham F, Spaulding A, Popescu L, Altman T, Paulsen I, Keseler IM, Caspi R (2010). "Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology." Brief Bioinform 11(1);40-79. PMID: 19955237

Karp11: Karp PD, Latendresse M, Caspi R (2011). "The pathway tools pathway prediction algorithm." Stand Genomic Sci 5(3);424-9. PMID: 22675592

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Page generated by Pathway Tools version 29.0 (software by SRI International) on Mon Jun 30, 2025, BIOCYC18A.